PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00538.1_g00012.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 394aa MW: 43946.1 Da PI: 4.5607

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00538.1_g00012.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	260.1	7.6e-80	112	377	1	274
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAea+++++l+ a+ l++ ++ l +s+ g +m+++ ayf+eA ++++r+ ++ + s s++ + ++ f+ Sme2.5_00538.1_g00012.1 112 LVNTLMACAEAIQENNLSFADVLISDIRRLtVSQIGGAMKKV-AYFAEAFYHKIHRTIPQ---NIVES-----FYSTNPFLHTSFY 188 6899************************666667777776.6********3332...22111.....23344456678 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 +P+lk++++taNq Ilea++ ++rvH+iDf+ +qG+ WpaLlqaLa Rp+gpp +R+ g++ + ++ +++ l+e+g++La+fA Sme2.5_00538.1_g00012.1 189 ASCPFLKIAYFTANQSILEAFADSKRVHVIDFSFNQGFRWPALLQALALRPGGPPAFRLSGISVQPKSddNSDPLQEVGWKLAQFA 274 ************************************************************9855556899********** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 + +gv+fef+ +++++l+d+e ++L++ + Ea+aVn+v++lhrl+++++++e+ vL+l+ +++Pk+v+++e+ea++n++ F Sme2.5_00538.1_g00012.1 275 DVTGVEFEFRGFMVHALTDVEASMLDIGHsdVEAVAVNSVFELHRLFSSPGAIEK----VLDLIGRIQPKIVTIAEREANLNGNAF 356 *********************9988889***********99999999....*********************** PP GRAS 254 lerflealeyysalfdsleak 274 ++r+ ea +yys++fd+le++ Sme2.5_00538.1_g00012.1 357 MDRIKEAWNYYSTMFDMLENS 377 ****************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.724	86	394	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-77	112	377	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MSSTEISMEN IIEDEDEDED SFVSNTNAII YAASDEHHHH HQQISTAAGG GDGDDDSMIV 60 SSSASSSWFM NNQQEIRIFN VDFRALCDNR LKSGPGSEFR GNTGKQETIV RLVNTLMACA 120 EAIQENNLSF ADVLISDIRR LTVSQIGGAM KKVAYFAEAF YHKIHRTIPQ NIVESFYSTN 180 PFLHTSFYAS CPFLKIAYFT ANQSILEAFA DSKRVHVIDF SFNQGFRWPA LLQALALRPG 240 GPPAFRLSGI SVQPKSDDNS DPLQEVGWKL AQFADVTGVE FEFRGFMVHA LTDVEASMLD 300 IGHSDVEAVA VNSVFELHRL FSSPGAIEKV LDLIGRIQPK IVTIAEREAN LNGNAFMDRI 360 KEAWNYYSTM FDMLENSEWT KRNTLDVEND GAVP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MSSTEISMEN IIEDEDEDED SFVSNTNAII YAASDEHHHH HQQISTAAGG GDGDDDSMIV  60
SSSASSSWFM NNQQEIRIFN VDFRALCDNR LKSGPGSEFR GNTGKQETIV RLVNTLMACA  120
EAIQENNLSF ADVLISDIRR LTVSQIGGAM KKVAYFAEAF YHKIHRTIPQ NIVESFYSTN  180
PFLHTSFYAS CPFLKIAYFT ANQSILEAFA DSKRVHVIDF SFNQGFRWPA LLQALALRPG  240
GPPAFRLSGI SVQPKSDDNS DPLQEVGWKL AQFADVTGVE FEFRGFMVHA LTDVEASMLD  300
IGHSDVEAVA VNSVFELHRL FSSPGAIEKV LDLIGRIQPK IVTIAEREAN LNGNAFMDRI  360
KEAWNYYSTM FDMLENSEWT KRNTLDVEND GAVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-37	119	377	26	280	Protein SCARECROW
5b3h_A	7e-37	119	377	25	279	Protein SCARECROW
5b3h_D	7e-37	119	377	25	279	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249633.3	0.0	DELLA protein GAI
Swissprot	Q7Y1B6	1e-110	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A3Q7IN05	0.0	A0A3Q7IN05_SOLLC; Uncharacterized protein
STRING	Solyc10g086380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-104	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]