PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00538.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 394aa    MW: 43946.1 Da    PI: 4.5607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00538.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.17.6e-801123771274
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                              lv++L++cAea+++++l+ a+ l++ ++ l +s+ g +m+++ ayf+eA  ++++r+ ++    +  s       s++ + ++ f+
  Sme2.5_00538.1_g00012.1 112 LVNTLMACAEAIQENNLSFADVLISDIRRLtVSQIGGAMKKV-AYFAEAFYHKIHRTIPQ---NIVES-----FYSTNPFLHTSFY 188
                              6899**************************666667777776.6************3332...22111.....23344456678** PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                +P+lk++++taNq Ilea++ ++rvH+iDf+ +qG+ WpaLlqaLa Rp+gpp +R+ g++ + ++  +++ l+e+g++La+fA
  Sme2.5_00538.1_g00012.1 189 ASCPFLKIAYFTANQSILEAFADSKRVHVIDFSFNQGFRWPALLQALALRPGGPPAFRLSGISVQPKSddNSDPLQEVGWKLAQFA 274
                              **************************************************************9855556899************** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              + +gv+fef+ +++++l+d+e ++L++ +   Ea+aVn+v++lhrl+++++++e+    vL+l+ +++Pk+v+++e+ea++n++ F
  Sme2.5_00538.1_g00012.1 275 DVTGVEFEFRGFMVHALTDVEASMLDIGHsdVEAVAVNSVFELHRLFSSPGAIEK----VLDLIGRIQPKIVTIAEREANLNGNAF 356
                              *************************9988889***************99999999....*************************** PP

                     GRAS 254 lerflealeyysalfdsleak 274
                              ++r+ ea +yys++fd+le++
  Sme2.5_00538.1_g00012.1 357 MDRIKEAWNYYSTMFDMLENS 377
                              ******************877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.72486394IPR005202Transcription factor GRAS
PfamPF035142.6E-77112377IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSSTEISMEN IIEDEDEDED SFVSNTNAII YAASDEHHHH HQQISTAAGG GDGDDDSMIV  60
SSSASSSWFM NNQQEIRIFN VDFRALCDNR LKSGPGSEFR GNTGKQETIV RLVNTLMACA  120
EAIQENNLSF ADVLISDIRR LTVSQIGGAM KKVAYFAEAF YHKIHRTIPQ NIVESFYSTN  180
PFLHTSFYAS CPFLKIAYFT ANQSILEAFA DSKRVHVIDF SFNQGFRWPA LLQALALRPG  240
GPPAFRLSGI SVQPKSDDNS DPLQEVGWKL AQFADVTGVE FEFRGFMVHA LTDVEASMLD  300
IGHSDVEAVA VNSVFELHRL FSSPGAIEKV LDLIGRIQPK IVTIAEREAN LNGNAFMDRI  360
KEAWNYYSTM FDMLENSEWT KRNTLDVEND GAVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-3711937726280Protein SCARECROW
5b3h_A7e-3711937725279Protein SCARECROW
5b3h_D7e-3711937725279Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249633.30.0DELLA protein GAI
SwissprotQ7Y1B61e-110GAI_SOLLC; DELLA protein GAI
TrEMBLA0A3Q7IN050.0A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-104GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]