PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00538.1_g00005.1 | ||||||||
Common Name | MYB, MYB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25302.3 Da PI: 5.4015 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 14 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ll ++ + W++Ia +++ Rt++++k++w+++ Sme2.5_00538.1_g00005.1 14 KGAWTEEEDLLLRKCM----DK-WSLIAGRFP-ERTANDVKNYWNTH 54 79*********98774....46.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-12 | 9 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.393 | 9 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-15 | 11 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-8 | 13 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-9 | 14 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-8 | 16 | 55 | No hit | No description |
SuperFamily | SSF101447 | 4.18E-5 | 91 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MNTATVAKSL GVRKGAWTEE EDLLLRKCMD KWSLIAGRFP ERTANDVKNY WNTHIQKKLT 60 NSRPQMQERK HNNALKITKN TILRPQPRPP PPPPPPPPPP PRTFSSAKNV SWCTNKNMNI 120 TNTLDKDNER HKEIGVNTCE KPKGDATSSS IDDDGVQWWT SLLENCNEIE EEATAVLSFE 180 EENKFLPNLL HEENNSPPMQ QGQNDGWDDF SVDIDLWNLF N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC525885 | 0.0 | KC525885.1 Solanum melongena strain YZ14 MYB transcription factor (MYB) mRNA, complete cds. | |||
GenBank | KF727477 | 0.0 | KF727477.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311547.1 | 1e-75 | transcription factor MYB113-like | ||||
TrEMBL | M9ZVF9 | 1e-122 | M9ZVF9_SOLME; Anthocyanin R2R3-MYB transcription factor | ||||
STRING | Solyc10g086290.1.1 | 1e-74 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-13 | myb domain protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|