PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00536.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 368aa    MW: 42264.1 Da    PI: 6.6526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00536.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-17106152148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT eEd ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  Sme2.5_00536.1_g00013.1 106 KGQWTIEEDRLLIHLVEKYGIRKWSQIAQMLK-GRIGKQCRERWHNHL 152
                              799****************************9.*************97 PP
2Myb_DNA-binding551.9e-17159200245
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Sme2.5_00536.1_g00013.1 159 DFWTEEEDRILIQAHGEVGNK-WAEIAKRLP-GRTENSIKNHWN 200
                              67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.214101156IPR017930Myb domain
SMARTSM007172.4E-15105154IPR001005SANT/Myb domain
PfamPF002495.3E-16106152IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-32106199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27107160IPR009057Homeodomain-like
CDDcd001671.54E-14109152No hitNo description
SMARTSM007172.6E-17157205IPR001005SANT/Myb domain
PROSITE profilePS5129422.239157207IPR017930Myb domain
PfamPF002498.1E-16161200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-22161206IPR009057Homeodomain-like
CDDcd001672.04E-13161203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MIDGNTNGTY HDPFDPFSNT EDNFSSLRDF NFSNYELNPP FDQENVMKNN FHGVDGDEFV  60
NPNLNFVNVP DEQSSCVTGD HHNNLSSSMK KKPGGRGRPK KSKSSKGQWT IEEDRLLIHL  120
VEKYGIRKWS QIAQMLKGRI GKQCRERWHN HLRPDIKKDF WTEEEDRILI QAHGEVGNKW  180
AEIAKRLPGR TENSIKNHWN ATKRRQFSRR KCRTKWPRPS SLLQNYIKSL NLEKGSTKKG  240
KDTNPNGRVI GGSSYTDPVP ENISQNLGNG PKRHANIANV KVSPESESVE FCEGNDNIGD  300
FDLSEVPDFE LDDDFFMGEI NPHVGSSHEN YEKCMGMEIM PYYEVPTLMQ GEVNKEIDLM  360
EMISRVNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-451062074105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-4510620758159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-4510620758159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-451062074105C-Myb DNA-Binding Domain
1msf_C2e-451062074105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2192101e-126AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence.
GenBankAC2329441e-126AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence.
GenBankHG9755181e-126HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242162.10.0transcription factor MYB98-like
TrEMBLK4C8M40.0K4C8M4_SOLLC; Uncharacterized protein
STRINGSolyc06g071520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-72myb domain protein 98