PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00515.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 500aa    MW: 57594.8 Da    PI: 5.3232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00515.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.82.5e-871144861374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              lve Ll+ Ae v ++ + +a +lL++ ++l+s++g+p++Rl+ yf +AL++r+ r+  ++  +      + ++s ++++a ++  +
  Sme2.5_00515.1_g00016.1 114 LVEHLLASAEKVGERLFDRAINLLNECEKLSSKTGNPVERLVYYFSQALRERVDRERGNTKGSGIDGMRDLQESLRSINACTIALQ 199
                              57899**************************************************5555544443334444679999999999889 PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
                                Pi ++  ++  qaIle ve+++++HiiD++i++G+QW  L+qaLa+ +    ++   l +T+++  +  sk+++eetg+rL  f
  Sme2.5_00515.1_g00016.1 200 DLPICQVVKFAGIQAILENVENSKKIHIIDLEIKMGVQWTILMQALATHQqnsrNPIEYLNVTALSGVQ--SKTNVEETGKRLMCF 283
                              99*********************************************888665444559********66..*************** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                              Ae+++  f+f++++++++ dle e+++++++Ea++V +++ l ++     +++++ d ++ ++k+l+P++++v+e ea++ns+ F+
  Sme2.5_00515.1_g00016.1 284 AESFHFLFSFKIVTVEDILDLEREDFDIDKEEAIVVYSQYLLSNMI----TQQDRLDFLMGFIKGLNPRIMIVAEVEAKLNSPVFV 365
                              ****************************************999998....555566779*************************** PP

                     GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              +rf+eal y+ a+fd le  + +++++r+ +E e++   i+n++a eg+er+ rh t e Wre ++++G++++++s++   qak++
  Sme2.5_00515.1_g00016.1 366 NRFIEALFYHGAFFDLLEDCMKNNESTRMAMESEVMWHGIRNIIAVEGEERTIRHVTIELWREYFKRFGMEEMKMSNSSLYQAKMV 451
                              ************************************************************************************** PP

                     GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +k++ ++ +++e +++ +v+gWk+ pL s+SaW+
  Sme2.5_00515.1_g00016.1 452 AEKFSgKKSFTLEMNENFIVIGWKGTPLNSLSAWK 486
                              *****9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.26688465IPR005202Transcription factor GRAS
PfamPF035148.7E-85114486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MKEQNEQHFV TFDDWDFDNE DKTTTVLYVK ETTESRNSLN SSLNILKDFG NGFRKLKGQK  60
IDVVQTSESE CTPSVCKLST EEILRLGGHK FIQSAEFDHP LFSLPDEDSR SVVLVEHLLA  120
SAEKVGERLF DRAINLLNEC EKLSSKTGNP VERLVYYFSQ ALRERVDRER GNTKGSGIDG  180
MRDLQESLRS INACTIALQD LPICQVVKFA GIQAILENVE NSKKIHIIDL EIKMGVQWTI  240
LMQALATHQQ NSRNPIEYLN VTALSGVQSK TNVEETGKRL MCFAESFHFL FSFKIVTVED  300
ILDLEREDFD IDKEEAIVVY SQYLLSNMIT QQDRLDFLMG FIKGLNPRIM IVAEVEAKLN  360
SPVFVNRFIE ALFYHGAFFD LLEDCMKNNE STRMAMESEV MWHGIRNIIA VEGEERTIRH  420
VTIELWREYF KRFGMEEMKM SNSSLYQAKM VAEKFSGKKS FTLEMNENFI VIGWKGTPLN  480
SLSAWKFHKS STFRRAYLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4013748626375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349956.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1A0F90.0M1A0F9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000119540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-51RGA-like 2