PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00515.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CAMTA
Protein Properties Length: 859aa    MW: 97237.5 Da    PI: 7.1195
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00515.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1132.31.7e-412010434118
                     CG-1  34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                               + g+++L++rk++r+fr+DG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n+tf rrcywlL+++le+ivlvhy+e++
  Sme2.5_00515.1_g00004.1  20 MQGGTIVLFDRKMLRNFRRDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNTTFVRRCYWLLDKTLEHIVLVHYRETQ 104
                              5789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010763.5E-461104IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143760.1641109IPR005559CG-1 DNA-binding domain
PfamPF038595.9E-3521102IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-5314404IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.5E-13315402IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.207.2E-17500614IPR020683Ankyrin repeat-containing domain
CDDcd002044.90E-16500610No hitNo description
SuperFamilySSF484033.11E-18501615IPR020683Ankyrin repeat-containing domain
PfamPF127963.2E-7501580IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.698509622IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.701551583IPR002110Ankyrin repeat
SMARTSM002481.8E-6551580IPR002110Ankyrin repeat
SuperFamilySSF525401.91E-6661764IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001514713735IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236714743IPR000048IQ motif, EF-hand binding site
PfamPF006120.095716734IPR000048IQ motif, EF-hand binding site
SMARTSM000150.013736758IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.048737761IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4738757IPR000048IQ motif, EF-hand binding site
SMARTSM0001525813835IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352814843IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MESSVSGRLV GWEIHGFRTM QGGTIVLFDR KMLRNFRRDG HNWKKKKDGK TVKEAHEHLK  60
VGNEERIHVY YAHGEDNTTF VRRCYWLLDK TLEHIVLVHY RETQEGSSNS TVAQGSPAAP  120
VSSGSALSDP ADLSSSWVLS PDSAVDQQYP ASQHANLETN RDMTVQNHEQ RLLEINTLEW  180
DDLLAPGDSN KIIATQQGGK TAYVQHTLYE QHNLRELNGY SLNGVSSSPE RMSTVNNLNE  240
ITFQTMDGQM TEYGVMTVST GDSFDSLNNN RLQTQDSFGR WMNYLITDSS GSTDDPTPES  300
SVSTGQSNAR EWVFNITEIS PAWAPSNEET KIFVIGHFHG AQSHLESSSL HCVCGDACFP  360
AEVLQPGVYR CIVSPQTPGV VNIYLSFDGT KPISQVMSFE FRAPLVHVWT EPPESKSNWD  420
EFRNEMRLAH LLFSTSKSLN ILSSKINQDL LKDAKTFAGK CSHIIDDWAC LIKSIEDKKL  480
SVPHAKDCLF ELSLKTRLQE WLLERIVEGC KISEHDEQGQ GVIHLCAILG YTWAVYPFSW  540
SGLSLDYRDK YGWTALHWAA YYGREKMVAT LLSAGAKPNL VTDPTSENLG GCTASDLASK  600
NGHEGLGAYL AEKALVAQFK DMTLAGNISG SLQTTTESIN PGNFTQEELN LKDSLAAYRT  660
AADAAARIQA AFRERELKVR TEAVESSNTE MDARSIIAAM KIQHAFRNYE MQKQLAAAAR  720
IQYRFRTWKM RKEFLHMRRQ AIKIQSVFRG FQVRRQYGKI IWSVGVLEKA LFRWRLKRKG  780
FRGLKLQSSQ VVHKPDDVEE DFFQASRKQA EERIERSVVR VQAMFRSKQA QEQYRRMKLE  840
HNKATLEYEG TRDPDTEMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660510.0JN566051.1 Solanum lycopersicum calmodulin-binding transcription factor SR3L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059394.10.0calmodulin-binding transcription activator 6 isoform X2
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLH8ZRY60.0H8ZRY6_SOLLC; Calmodulin-binding transcription factor SR3L
STRINGSolyc12g099340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]