PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00498.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 701aa    MW: 77087 Da    PI: 8.3126
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00498.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.5e-14142181242
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                              ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  Sme2.5_00498.1_g00007.1 142 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 181
                              89**************************.********9875 PP
2TCR50.63.8e-16226265140
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Sme2.5_00498.1_g00007.1 226 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 265
                              589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-16141181IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.832142266IPR005172CRC domain
PfamPF036382.7E-11143178IPR005172CRC domain
SMARTSM011148.4E-20226267IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12229264IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MEKSEGGDSF PPNKAQSEVV ASSTVTTGVD FPAKKLARQL DFTVFGGGGG QSPAAAVTEQ  60
TQKIQPLTMT SGPQIVPVKL TPASRPQLQP LPQQPQQHMM LMPMKQALVA PTHPSIRPPK  120
PESPRARPRQ SASEVKDGTP KKQKQCNCKH SRCLKLYCEC FASGIYCDGC NCNNCHNNVE  180
NEPARREAVE ATLERNPHAF RPKIASSPHG ARDNKEETGD GLVLAKHNKG CHCKKSGCLK  240
KYCECFQANI LCSENCKCMD CKNFEGSEER QALFHGDHAT NMAFLQQAAN AAITGAIGSS  300
GYGSPPVNKK RKSQELFFGS TIKDPVHRHG QLQQGNHTKS SVLPSLSSSP GPCGGNAATV  360
GPSKFTYRSL LEDLIQPQDL KELCSVLVVY SGEAAKMLAA EPFSFLMLGK HKRQLWDEYF  420
FLQKAKHAFD NTGRNMSEER LFRLENFTIH KLGIMRIHRK WTRFTWSINL PQTLCLYSWD  480
RQYEKDASKK QAEGQTEASL ASSTQERVQN QKDSGSEKDM LDCCSSGDQG EKISTEESSL  540
DGADISKRRP MSPGTLALMC DESDAMFAAA VTSPNDLATL SCNTSSQLSH GQSVTETYAE  600
QERIVLTKFR DCLNRLVTLG EIKEKRCSSM VRGIDSVDQK DMIGNGETKS QHDSFNNGVS  660
SSPLPQQRTT QMFSAVVTTA NNNAPPKVHR QDENGDVKPK I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-311342752132Protein lin-54 homolog
5fd3_B3e-311342752132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-180HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-180HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313729.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-146TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A3Q7J2R30.0A0A3Q7J2R3_SOLLC; Uncharacterized protein
STRINGXP_009608929.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-134Tesmin/TSO1-like CXC domain-containing protein