PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00471.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 770aa    MW: 83099.5 Da    PI: 5.4191
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00471.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR32.61.6e-104855101540
                      TCR  15 kkYCeCfaagkkCseeCkCedCkNke 40 
                              + YCeCfaag++C e C C+dC+Nk 
  Sme2.5_00471.1_g00002.1 485 RSYCECFAAGVYCVEPCACQDCFNKP 510
                              68**********************96 PP
2TCR51.12.6e-16557595139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Sme2.5_00471.1_g00002.1 557 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 595
                              589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-4474512IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.973474597IPR005172CRC domain
PfamPF036385.7E-7485509IPR005172CRC domain
SMARTSM011147.5E-18557598IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.5E-12559595IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MSKKEGDDEK ASLEGENVEE KSEEVEGRKS EESPFSNFLN NLSPIKPVKA AHFPQTLNAL  60
SFGSIPSVFT SPHVSSIRES RFLRSHLLSD PSKPEFASDN SVKVDNDEGT LDAVNSSNEP  120
NKSLGSKISV VEASHVSSKL AVERTLNYEC NDSPSTLPTG PIRGKSLSEF AGSSVTYVPL  180
GQGMSGKGLL RCEVNMEGTN ESDPNKETSG CDWENLICDA TDLLIFDSPG DPEAFTKAAG  240
PNLRHFGFAS NEIQNVQVFG QVSTSEGGGE GSETEKPSTQ PGDETQVNEY AENQNMKPDS  300
SLTNDGMGVG QSERTDNEMV STLYRGMRRR CLVFEMVGSR RKHVDEGSSS SAVQDADGNP  360
ACNEKQLVPY KTVNESSRCI LPGIGLHLNA LAASSKDGKV VKHETNASGK QLLITSGSAV  420
SLHTLVTGQE SVSKSLPETS REIVPLENSV PLMEDVSLAP GYVNSEELNQ TSPKKKRHTP  480
TGSWRSYCEC FAAGVYCVEP CACQDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNAD  540
SLSETGDDSS KTPASARHKR GCNCKKSGCL KKYCECYQGG VGCSINCRCE GCKNAFGRKD  600
GSVFIGTDGD AEEEETDAYE KSIVDRTSHK NPLQSDAEVN PDSVVPATPL AFRRPPMQLP  660
FPLKNKPPRS SFLSIGSSSG IFAGQGVGRP EFFQPQPKFE KPIEPIQEDE MPEILQQGGT  720
SSPISGIKTA SPNRKRVSPP HCVANSPGRR SSRKLILQSI PSFPSLTPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1251259449120Protein lin-54 homolog
5fd3_B2e-1251259449120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360749.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLM1D5M10.0M1D5M1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000820980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-140TESMIN/TSO1-like CXC 2