PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00468.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 291aa    MW: 32556.8 Da    PI: 4.3707
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00468.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.2e-1364109755
                      AP2   7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              r+++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sme2.5_00468.1_g00013.1  64 RRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 109
                              89999*******99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.153140IPR001471AP2/ERF domain
SMARTSM003800.0059246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-9741IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-8742IPR016177DNA-binding domain
PROSITE profilePS5103216.87158117IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1559119IPR016177DNA-binding domain
PfamPF008472.2E-964109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1565118IPR001471AP2/ERF domain
CDDcd000182.20E-2165119No hitNo description
SMARTSM003803.6E-2065123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVEINNAVYL GAYDDEGTAA HAYDLAALKY WGAETILNFP VSTYEKEIKE MEGQSREEYI  60
GSLRRHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY DMAAIEYRGL NAVTNFDLSR  120
YIKWLKPNNN NNNNNNNDQS NPNVETNMSP TTNHSIGLIS TSTSTSTSTT ATMTSFSAAS  180
IYSHLQLTTD TSIPDVSAIS QNRSSSATSA LGLLLQSTKF KEMMEMTLAA ECPPAPIEIS  240
DPEPPQNSSF PEDIKTYFDN QEFGNFGHHD QEEDMVFNEI NSFMPPLMQF D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754517e-84HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884458.11e-154AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM1DEG51e-152M1DEG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877451e-153(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-46AP2 family protein