PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00423.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 277aa    MW: 30155.2 Da    PI: 5.6022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00423.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3074132259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY ++Hnh+
  Sme2.5_00423.1_g00013.1  74 QDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYCSDHNHQ 132
                              79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-3165134IPR003657WRKY domain
PROSITE profilePS5081131.37668134IPR003657WRKY domain
SuperFamilySSF1182906.41E-2669134IPR003657WRKY domain
SMARTSM007741.4E-3573133IPR003657WRKY domain
PfamPF031064.6E-2574132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDRLYKSPF FHKQEDSTGT PPDNAADSCF SGDEAAEISM PSPRKRRGAK KKVISVPIIE  60
ADGSRSKGEV YPPQDSWSWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRLDPTM  120
LLITYCSDHN HQIPAAAATK HHHHNHPTIA TTPSNSSPTT STGTAEDNNA AAAAVTDAAV  180
QDKSSPEEPD PFAYQNDNGF SELAGELGWF SYMGTTTFME STSTSAVGST WNDSDVALML  240
PIREEDQSLF GDLGELPECS VVFRRYGVET PCCGGTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2051134679Disease resistance protein RRS1
5w3x_D2e-2051134679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132840.0BT013284.1 Lycopersicon esculentum clone 134891F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081017.11e-169probable WRKY transcription factor 69 isoform X2
TrEMBLA0A0V0HP801e-163A0A0V0HP80_SOLCH; Putative WRKY transcription factor 69-like (Fragment)
STRINGSolyc07g055280.2.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-57WRKY DNA-binding protein 69