PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00417.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21718.6 Da PI: 6.4779 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv Gavg+++ Sme2.5_00417.1_g00017.1 2 SCSGCRVLRRRCSDNCTLRTCLdgindPRAQGNATIFVSKFFGRSDLMSFIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLS 87 6*************************99********************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++l+q++++++l+ Sme2.5_00417.1_g00017.1 88 TGNWHLCQKAVQTVLA 103 *********9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.078 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSCSGCRVLR RRCSDNCTLR TCLDGINDPR AQGNATIFVS KFFGRSDLMS FIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHLCQKAVQT VLAGGNPRQV FTGIITPPYF 120 DDSFECGGAW DIPNQFPHKY GSDQIEATEW ISSERRWNTS SSFGSETELS DVTLCLDSGM 180 GYTDGVKGEE PKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 4e-72 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362058.1 | 1e-121 | PREDICTED: LOB domain-containing protein 38-like | ||||
Refseq | XP_015072913.1 | 1e-121 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-48 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 2e-48 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | M1BXU3 | 1e-120 | M1BXU3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055393 | 1e-121 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 7e-51 | LOB domain-containing protein 39 |