PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00411.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 265aa MW: 30769.1 Da PI: 7.582

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00411.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	96	141	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++++++f+ Lr+llP+ +K +K+++L ++eY++sL Sme2.5_00411.1_g00009.1 96 HHMISERKRREKLRESFQHLRSLLPPG-----TKKDKSSVLASTTEYLSSL 141 68899******************97.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.06E-11	91	146	No hit	No description
PROSITE profile	PS50888	14.659	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-16	93	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-10	96	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-14	96	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-13	98	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MNFFPKEFTK QTEETQTLTQ FQGLQFPRIE GEDDAIRQAY LAVMMLSSSP SHHSSSRGQI 60 QENLTRDDYR LITRKTSAFS RQEGIQMNRA RSTQVHHMIS ERKRREKLRE SFQHLRSLLP 120 PGTKKDKSSV LASTTEYLSS LKHQVEELCK RNEILEAQLL TRKMFSQFQQ NGSGRVDVYI 180 TNIEERIVDL QVIARGKCNI LDLVNCLMEF LKMANYVNLV AIDANTTMVQ SCPHAIITLR 240 LTIQGEEWDE YAFLEETKRI VEDMT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	105	ERKRRE
2	101	106	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-111	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353540.1	1e-124	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	9e-37	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	M0ZHH8	1e-123	M0ZHH8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400000883	1e-105	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4567	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-31	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]