PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00407.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 39818.4 Da PI: 4.8805 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.5 | 3.2e-15 | 176 | 223 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ + f +L +l+P++ kKl+Ka+iLe A++YIk+L+ Sme2.5_00407.1_g00004.1 176 QDHVLAERKRRERLTQYFITLSTLIPNL-----KKLDKASILEDAIKYIKQLE 223 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.558 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-13 | 176 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 177 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-17 | 178 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.88E-16 | 178 | 227 | No hit | No description |
SMART | SM00353 | 3.7E-16 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDISSVTWWS EMDVMNINDL EYIDHGQTMT TFEDFPFSND PFITSCTNDN IQSSQAAGIF 60 EENPSFCNST NSINYQNTTS FSPPSSSSPS VISFSNSNSP SATTTTAVQN NFKNLNSASV 120 KSEVPSGTTI NFSSSNISPD SDYDDSKELL QAMGFGGGDI TQTKKMSYSR TPLQAQDHVL 180 AERKRRERLT QYFITLSTLI PNLKKLDKAS ILEDAIKYIK QLEEQVKCLD DEANYKEPVK 240 RSRLLSNYED FSTCDENSNK SVPDIEVRVS DGNVLIRVCC KKQSGIIKKI FSQVEMFNLT 300 ITSSSAIPFG YNTTHITIVA KMDHQLNMTT EYIKNKIRSS IMKLINSHEE ANTLVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 186 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357745.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | M1D0K4 | 1e-174 | M1D0K4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078699 | 1e-175 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-42 | bHLH family protein |