PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00407.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 305aa MW: 34900.8 Da PI: 6.8953 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7e-13 | 128 | 174 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR+++ ++f L +lP + kK++Ka+iLe+A++++++L Sme2.5_00407.1_g00002.1 128 QHHIIAERKRREKLSQKFVALSAILPGL-----KKVDKASILEQAIKHVQEL 174 6899************************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.154 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-11 | 128 | 179 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-16 | 128 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-15 | 128 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 128 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDDFTSQKST ISEDQETSEA CLSPDSTNYP CHFHQEISKS KVSKIDFSLI TPIGCKRRAI 60 DHHQPELNNN KRISSSSSRF LSFNNNNMDS ILFPSCKTEA VDEMYLCDSS DDKLFPSKDK 120 RIPSADHQHH IIAERKRREK LSQKFVALSA ILPGLKKVDK ASILEQAIKH VQELKEKVQL 180 LEKEKNSRPS QEEAVMFVTK SKLEMEEENS NNNIDRDFPG DIEVRFSDNN VLIRISCARR 240 KAFVLNIHNE IEKLHLTIVQ SCMMPFGEQA IDITLVAKMD ESFCMTLKDL AKHVQMVTGR 300 LMTQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_B | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_E | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_F | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_G | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_I | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_M | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
5gnj_N | 4e-12 | 129 | 204 | 8 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | ERKRRE |
2 | 134 | 139 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-63 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357746.1 | 1e-144 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 4e-42 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | M1D0K1 | 1e-143 | M1D0K1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078696 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13602 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-38 | bHLH family protein |