PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00400.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 333aa    MW: 37478 Da    PI: 8.2106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00400.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l d++++ G g+W++ + + g++R++k+c++rw +yl
  Sme2.5_00400.1_g00011.1 14 KGPWTPEEDQKLMDYIEKNGCGSWRALPTKAGLKRCGKSCRLRWINYL 61
                             79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ +E++ +++++++lG++ W++Ia+++  +Rt++++k++w+++l
  Sme2.5_00400.1_g00011.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLA-NRTDNEIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.71961IPR017930Myb domain
SuperFamilySSF466891.1E-2911108IPR009057Homeodomain-like
SMARTSM007177.0E-121363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241568IPR009057Homeodomain-like
CDDcd001671.51E-91661No hitNo description
PROSITE profilePS5129425.99562116IPR017930Myb domain
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1567112IPR001005SANT/Myb domain
CDDcd001674.03E-1169112No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLMDYIE KNGCGSWRAL PTKAGLKRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLANRT DNEIKNYWNT HLKKKLTQMG  120
IDPNTHKPKS NIFGSENLSH MAQWEKARLE AEARLVRESK RQQQIISNSN NNNINNYNNI  180
HFGPNVLQPF QTKLPSPPCL DVLNAWQRGA IWSNMPKITK DNFFNHSSTP TSNLSNNNSL  240
FMLPSNNNSN ILGAGLVDNS SLVGTGSLME NNINGISSSN YPSLNNIQGF TNLENVLGSC  300
EEENDEDDNN NDNNYWNTIL ESCASLVDGS PVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-94HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228373.11e-179transcription factor MYB106-like
RefseqXP_015070944.11e-179transcription factor MYB106-like
SwissprotQ9LE633e-91MY106_ARATH; Transcription factor MYB106
TrEMBLM1C9301e-180M1C930_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000624370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-92myb domain protein 16