PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00386.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 561aa MW: 61095 Da PI: 7.3269

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00386.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.1e-30	199	258	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+ Sme2.5_00386.1_g00007.1 199 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCPEDMSILITTYEGTHNHT 258 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-32	184	260	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	191	260	IPR003657	WRKY domain
PROSITE profile	PS50811	27.91	194	260	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	199	259	IPR003657	WRKY domain
Pfam	PF03106	9.3E-27	200	257	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MENKNKADHD DEVCADQENI VHKEATAVNV MVKRERSPPE NNSMASSSTH KEQDDQIELA 60 KAEMREVMEE NQRLRMHILF LGRTTSDMKK DELSKIVKKD KGHDNEGGVN KTLDLGLDCK 120 FKTIPTECSP VNLSPENSLE DQANKDENGE TSTTWPPNKN LKTMRNNGDG DGDGDDVSQQ 180 NPTKRARVSV RVRCDATTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPN CPVRKQVQRC 240 PEDMSILITT YEGTHNHTLP LSATAMASTT SAAASMLLSG LSSSSDPNPQ ATATTTTNTN 300 TNNATSANIN GLNFYLSDAS RHKSSYYFPN SSFSASAPNS HPTITLDLTS TSSSSSSSLS 360 HLNRMSHNFP PRYNYNNNNS STNLNFSSVL ESNSLPISWT NSSYPNQAYN KNNQNFGSLT 420 FSSRPNHENI FQSYLQKNNN ISTQSSLPPE TIAAATKAIT SDPNFHSALA AALTSIIGNT 480 GIENKLNVTE PFPILSSLPS TSNPNKCSSS FSNKPTSSAS ANNTQQPGNS NLVFFAQSSS 540 SLPFSTSNKG KSTSPSDSKV D

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MENKNKADHD DEVCADQENI VHKEATAVNV MVKRERSPPE NNSMASSSTH KEQDDQIELA  60
KAEMREVMEE NQRLRMHILF LGRTTSDMKK DELSKIVKKD KGHDNEGGVN KTLDLGLDCK  120
FKTIPTECSP VNLSPENSLE DQANKDENGE TSTTWPPNKN LKTMRNNGDG DGDGDDVSQQ  180
NPTKRARVSV RVRCDATTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPN CPVRKQVQRC  240
PEDMSILITT YEGTHNHTLP LSATAMASTT SAAASMLLSG LSSSSDPNPQ ATATTTTNTN  300
TNNATSANIN GLNFYLSDAS RHKSSYYFPN SSFSASAPNS HPTITLDLTS TSSSSSSSLS  360
HLNRMSHNFP PRYNYNNNNS STNLNFSSVL ESNSLPISWT NSSYPNQAYN KNNQNFGSLT  420
FSSRPNHENI FQSYLQKNNN ISTQSSLPPE TIAAATKAIT SDPNFHSALA AALTSIIGNT  480
GIENKLNVTE PFPILSSLPS TSNPNKCSSS FSNKPTSSAS ANNTQQPGNS NLVFFAQSSS  540
SLPFSTSNKG KSTSPSDSKV D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	186	260	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	0.0	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887074.1	0.0	WRKY72b isoform X1
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U8H0S0	0.0	A0A1U8H0S0_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZCE2	0.0	A0A2G2ZCE2_CAPAN; probable WRKY transcription factor 61
STRING	Solyc06g070990.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	8e-47	WRKY DNA-binding protein 9

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]