PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00378.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 79aa MW: 9202.87 Da PI: 10.7157 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.5 | 1.5e-09 | 25 | 46 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYG+K+vk +++ r Sme2.5_00378.1_g00006.1 25 LDDGYKWRKYGKKKVKTNTNLR 46 59***************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.2E-10 | 11 | 46 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-8 | 18 | 46 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.131 | 20 | 46 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-5 | 26 | 46 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MGIEKGQKGE KHAIAFRTKT QLEILDDGYK WRKYGKKKVK TNTNLRCDKI MNEIIPEGLR 60 VASVANKMKE VRLKWFGHV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468256 | 4e-48 | CU468256.3 S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 4e-48 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556084.1 | 6e-22 | PREDICTED: probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2G3CN91 | 4e-21 | A0A2G3CN91_CAPCH; Putative WRKY transcription factor 59 | ||||
STRING | Solyc04g072070.2.1 | 5e-20 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13494 | 12 | 17 |