PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00377.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 37979.6 Da PI: 4.4356 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.2e-18 | 74 | 123 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++ +++++g Sme2.5_00377.1_g00002.1 74 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 123 69*******.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-36 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.92 | 74 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-31 | 74 | 133 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-22 | 74 | 132 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-11 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MCGGAIISDL VPPSRISRRL TADFLWDEFE ADFQHFKDYS DDDEDVKAFG SKSVRSADSS 60 SDAERSSKRK RKNQYRGIRQ RPWGKWAAEI RDPRKGIRVW LGTFNSAEEA ARAYDVEARR 120 IRGKKAKVNF PDDAPVAASR RVVKPNPQEA LQEENLNTVQ PNVAYINNLD AGSDESFSFF 180 EEKPAANQCG YKNTCFTAGD MGLGSVSPSA GANVYFSSDE GSNTFDCSDF DWGELGARTP 240 DMSSVLSEVL ESNGSHFDED ARPEKKQKSS SSTSLTGDGN TVNTLSEELS AFESQMKFLQ 300 IPYLEGNWDS SVDAFLNTSA IQEGGNAMDL WSFDDVPSLM GGVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 74 | 131 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC164347 | 0.0 | KC164347.1 Solanum tuberosum clone RSI9 ethylene responsive factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305599.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 3e-65 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | M1A1E2 | 0.0 | M1A1E2_SOLTU; Ethylene responsive factor 1 | ||||
STRING | PGSC0003DMT400012547 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 1e-56 | related to AP2 12 |