PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00372.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 246aa    MW: 26879.8 Da    PI: 5.7061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00372.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-1868116355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +++g
  Sme2.5_00372.1_g00002.1  68 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAISIKG 116
                              9****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-3266126No hitNo description
SuperFamilySSF541711.9E-2167125IPR016177DNA-binding domain
SMARTSM003809.6E-3867130IPR001471AP2/ERF domain
PROSITE profilePS5103223.35467124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3167125IPR001471AP2/ERF domain
PfamPF008471.9E-1268116IPR001471AP2/ERF domain
PRINTSPR003671.9E-106879IPR001471AP2/ERF domain
PRINTSPR003671.9E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAEVEVQISE AESSNTTSSV SSSSSSSLSA DSMHKSVFKS SSELPEEKQR PTKKQRVNGN  60
SDSRRQIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AISIKGSSAI  120
LNFPHLIDSL PRPVSNSPRD VQAAAAKAAS MRDPSSSSSS SSSSSSSTTT ITTGSEELCE  180
IIELPNLEES EDPKTELRLS ESIEGLLYSP WWADHSTDFC GYFLEHSAAA GESLICCSFE  240
TLKWAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19681251573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343055.11e-124PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD33e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0ZRX51e-122M0ZRX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067511e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]