PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00346.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 308aa    MW: 35413.1 Da    PI: 5.0235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00346.1_g00023.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-14651146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
  Sme2.5_00346.1_g00023.1  6 KGPWKEEEDEVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51
                             79*************************8887799**********87 PP

2Myb_DNA-binding46.58.4e-1562101344
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                              ++++eE+   +++ +q+G++ W++Ia +m+ gRt++++k++w
  Sme2.5_00346.1_g00023.1  62 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 101
                              79******************.*********.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.03157IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-21354IPR009057Homeodomain-like
SuperFamilySSF466891.05E-284101IPR009057Homeodomain-like
SMARTSM007176.9E-12555IPR001005SANT/Myb domain
CDDcd001675.09E-12853No hitNo description
PfamPF139211.5E-12959No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1855107IPR009057Homeodomain-like
PROSITE profilePS5129418.00358109IPR017930Myb domain
SMARTSM007174.9E-1359107IPR001005SANT/Myb domain
PfamPF002494.6E-1362101IPR001005SANT/Myb domain
CDDcd001679.31E-1162101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSEIKKGPWK EEEDEVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG  60
VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF WSSRQKRLAK ILKTSMPQPS  120
KSQENVNKED PVLPRVPSVE APKLNSVAEE RPLVVSQYCS SSYTNDFDTT NMVPLQELVN  180
STSHPFEQEI LPLEFTPNEK KTCIWPQYPL PFPQIPLQTN FGQPLDHQEL PMKLEDTDFL  240
DYFGQLGDSD IGNVQVPLAP SCSTGQERSC EVAVKREMDY PPTPDSFIDD FPMDMFDYID  300
PLPSPSEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28310724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0325371e-112AB032537.2 Nicotiana tabacum B25 mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086001.10.0transcription factor DUO1-like isoform X1
TrEMBLA0A3Q7F4170.0A0A3Q7F417_SOLLC; Uncharacterized protein
STRINGSolyc01g090530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-77MYB family protein