PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00346.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 35413.1 Da PI: 5.0235 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.9e-14 | 6 | 51 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw + Sme2.5_00346.1_g00023.1 6 KGPWKEEEDEVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51 79*************************8887799**********87 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.4e-15 | 62 | 101 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +m+ gRt++++k++w Sme2.5_00346.1_g00023.1 62 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 101 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.03 | 1 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 3 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-28 | 4 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-12 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.09E-12 | 8 | 53 | No hit | No description |
Pfam | PF13921 | 1.5E-12 | 9 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 55 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.003 | 58 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-13 | 62 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.31E-11 | 62 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSEIKKGPWK EEEDEVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG 60 VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF WSSRQKRLAK ILKTSMPQPS 120 KSQENVNKED PVLPRVPSVE APKLNSVAEE RPLVVSQYCS SSYTNDFDTT NMVPLQELVN 180 STSHPFEQEI LPLEFTPNEK KTCIWPQYPL PFPQIPLQTN FGQPLDHQEL PMKLEDTDFL 240 DYFGQLGDSD IGNVQVPLAP SCSTGQERSC EVAVKREMDY PPTPDSFIDD FPMDMFDYID 300 PLPSPSEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 3 | 107 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB032537 | 1e-112 | AB032537.2 Nicotiana tabacum B25 mRNA for hypothetical protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086001.1 | 0.0 | transcription factor DUO1-like isoform X1 | ||||
TrEMBL | A0A3Q7F417 | 0.0 | A0A3Q7F417_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g090530.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 2e-77 | MYB family protein |