PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00333.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 237aa MW: 26599.5 Da PI: 10.2419 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.8 | 2e-30 | 35 | 148 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 g kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk +eWLl++ak++i++l++++ ++ +e+ + ++ + + Sme2.5_00333.1_g00014.1 35 FGTKDRHSKVVTLKGLRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVEWLLKEAKHEIDKLPQLQIPPIREAgLPLTELLKLN--- 117 589*************************************************************7777655543333333333... PP TCP 87 sgkaaksaakskksqksaasalnlakesrakara 120 +++++a s+ +k+++++ +++e k +a Sme2.5_00333.1_g00014.1 118 ---HRPTNALSSTLRKDEETMVVVSDEYGVKLNA 148 ...2333333334444444444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-30 | 36 | 145 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.991 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MITRGVDPSD NITKFPKKAN SRLKDPRIVC VPRAFGTKDR HSKVVTLKGL RDRRVRLSVP 60 TALQLYDLQD KLGLDQPSKV VEWLLKEAKH EIDKLPQLQI PPIREAGLPL TELLKLNHRP 120 TNALSSTLRK DEETMVVVSD EYGVKLNARN LDLINHLKGT SNSNSNRNSF TFAPSYQNDF 180 LSRPVSLGHS GSRHGVEEIQ NFNVVAALPS TMYNMPLSSQ VVVYSPAGLP QYVFHPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246813 | 1e-75 | AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence. | |||
GenBank | HG975514 | 1e-75 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561903.1 | 4e-88 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Refseq | XP_016561905.1 | 3e-88 | PREDICTED: transcription factor TCP13-like isoform X2 | ||||
Refseq | XP_016561906.1 | 3e-88 | PREDICTED: transcription factor TCP13-like isoform X2 | ||||
TrEMBL | A0A2G3D3C1 | 8e-89 | A0A2G3D3C1_CAPCH; Transcription factor TCP17 | ||||
STRING | PGSC0003DMT400068332 | 7e-84 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-37 | plastid transcription factor 1 |