PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00326.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 386aa MW: 41284.6 Da PI: 6.3087 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 5e-39 | 35 | 94 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s Sme2.5_00326.1_g00010.1 35 HHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 94 6799*****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 35 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.674 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MQDIHPIGIG AGGGGGRFFG GGGGDRRLRP NNHQHHQALK CPRCDSLNTK FCYYNNYNLS 60 QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK SKRSKPKSTP SDAPEEHKSD TNSSSESSSL 120 TATTTAATAA ATNTSGAATM EDVSATSSNS ASTYLNFPES NFFIPPSTNQ TFDDPPLMEN 180 SAEDQFQDIG NFTNMITSSN YPFNMADIPA YRLPENQNTN EQWNQESKMV ETLPTSDELK 240 TEGMEGINKL KTRVEYPGLH ESRVNNSELA SLDWQPGGGG GGDGGGGDHG LLDLKKELFA 300 GRDFGAGDSS ISDGACCRLV RMPGTAIGEG WKSPQVIIAL RGIIFGSGGT CDDVIGQVSG 360 PFRSVCSVVT IFSLSIADTL SANRPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 22 | GGRFFGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080162.1 | 1e-126 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A3Q7HTR9 | 1e-120 | A0A3Q7HTR9_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010397 | 1e-117 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-35 | OBF binding protein 4 |