PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00310.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 324aa    MW: 36939 Da    PI: 6.2898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00310.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
  Sme2.5_00310.1_g00012.1 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                             678*******************************************97 PP
2Myb_DNA-binding46.77.5e-1567110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Sme2.5_00310.1_g00012.1  67 RGMFSQDEEDKIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                              788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.23961IPR017930Myb domain
SuperFamilySSF466891.01E-2812108IPR009057Homeodomain-like
SMARTSM007171.1E-91363IPR001005SANT/Myb domain
PfamPF002492.7E-131461IPR001005SANT/Myb domain
CDDcd001671.62E-81761No hitNo description
PROSITE profilePS5129423.61162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PfamPF002499.8E-1467110IPR001005SANT/Myb domain
CDDcd001671.32E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRHSCSVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPITHKQLK ENQVTRDEEN SANKTSMLQI PPHEQFTESK HVFDLLFVHE LQSNENPSEY  180
NSEVLTQYHD HHSEFENNPN YVFCSASSVT KLEHGHMTEI DFGSSSTSRM SSSNSSNMCS  240
NQNTAGIRMS GNSEALSWDV ENKMESLFQY PYIGVKTEEL KSSPSQERDQ FYGNSTAGDF  300
MSNYPLSSLT EELSGANLDV FQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344457.10.0PREDICTED: protein ODORANT1-like
TrEMBLM1BJE10.0M1BJE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000466450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-77myb domain protein 55