PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00298.1_g00013.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 525aa MW: 57189.3 Da PI: 6.3832

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00298.1_g00013.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.1	1.4e-36	178	236	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Sme2.5_00298.1_g00013.1 178 PDKILPCPRCNSSDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKN 236 7899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	175	235	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-31	180	236	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:2.20.25.10	9.4E-4	182	220	No hit	No description
PROSITE profile	PS50884	27.885	182	236	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	184	220	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MTCDSEIKLF GKILPVVVSG DGRDSTGSGG VRYEGNRNGS DQDRCLVGST ASSSEKDEAN 60 EGSDYVREEA EKDDVAGELS ETKFEEGDRN QMMEESENTK TSSESENSLR SPTDQDPQAV 120 KSSETENGPM NATNSEQNNL KKPVKSPTDE NPQALKSSET ENGPTNVTNS EQNNLKKPDK 180 ILPCPRCNSS DTKFCYYNNN NVNQPRHFCR SCQRYWTAGG TMRNLPVGAG RRKNKNLAAH 240 YHHISISEKL LAAGIESPNG LIHPIFKPNG TILSFGPDLP LGESMASALN QAEQRVANGS 300 YKAEVKNSSI KGGDTGVECH RKSNILTPNI MVEEGKSEPH KAAMHNINGM PSPVPCFHGV 360 PWTFPWNAAV PMSAICPIPF PLPFFPTPYW NCSVPPWSNP WLSPSLRAAN EKTSGSDPTS 420 PLGKHSREGD LLKPSNPGGK EQSEQKFSES SVLVPKTLRI DDPDEAAKSS IWSTLGIKYD 480 SANRGEFFKA LQPKSDDKHN KANTSPVLHA NPAALSRSIT FQQSA

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MTCDSEIKLF GKILPVVVSG DGRDSTGSGG VRYEGNRNGS DQDRCLVGST ASSSEKDEAN  60
EGSDYVREEA EKDDVAGELS ETKFEEGDRN QMMEESENTK TSSESENSLR SPTDQDPQAV  120
KSSETENGPM NATNSEQNNL KKPVKSPTDE NPQALKSSET ENGPTNVTNS EQNNLKKPDK  180
ILPCPRCNSS DTKFCYYNNN NVNQPRHFCR SCQRYWTAGG TMRNLPVGAG RRKNKNLAAH  240
YHHISISEKL LAAGIESPNG LIHPIFKPNG TILSFGPDLP LGESMASALN QAEQRVANGS  300
YKAEVKNSSI KGGDTGVECH RKSNILTPNI MVEEGKSEPH KAAMHNINGM PSPVPCFHGV  360
PWTFPWNAAV PMSAICPIPF PLPFFPTPYW NCSVPPWSNP WLSPSLRAAN EKTSGSDPTS  420
PLGKHSREGD LLKPSNPGGK EQSEQKFSES SVLVPKTLRI DDPDEAAKSS IWSTLGIKYD  480
SANRGEFFKA LQPKSDDKHN KANTSPVLHA NPAALSRSIT FQQSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354775.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	M1D6F9	0.0	M1D6F9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400083080	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-71	cycling DOF factor 2