PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00298.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 373aa    MW: 41332.5 Da    PI: 5.625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00298.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd +lv +++++G+g+W+ I+   g+ R+ k+c++rw +yl
  Sme2.5_00298.1_g00007.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding49.31.1e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sme2.5_00298.1_g00007.1  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.972965IPR017930Myb domain
SuperFamilySSF466897.86E-3111108IPR009057Homeodomain-like
SMARTSM007177.1E-151363IPR001005SANT/Myb domain
PfamPF002495.1E-161461IPR001005SANT/Myb domain
CDDcd001673.62E-121661No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.60966116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1467112IPR001005SANT/Myb domain
CDDcd001676.40E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNNNK  120
KVEGHDDNPD ENNHQERNSA SSSSSQSKIS KGQWERRLQT DIHTAKQALC DALSIDTTPN  180
NNNNNPSPHD QEQQQPGSIQ PSTTYASSAE NIAKLLQNWM KNSPNSTSSS SSKITPMSSL  240
NNNLSIGAVS TSSPSEGTAN VPTGQGLDSL FSFNSSNNSD ASQSMSVDEG GNFNTPENNN  300
AGIFQVESKP NLPDYKPEIG NFQEESKQNM ETQVPLTMLE KWLLDDANAQ AEHEDQLMGI  360
GMGMTLGETA DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-170HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354829.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-124MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2G3AUQ90.0A0A2G3AUQ9_CAPCH; Myb-related protein
STRINGPGSC0003DMT4000830760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-95myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]