PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00294.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 613aa    MW: 67782.4 Da    PI: 8.2734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00294.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-1659104147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +g WT+eEd+ l++av  + g++Wk+Ia+ ++  R++ qc +rwqk+
  Sme2.5_00294.1_g00006.1  59 KGGWTPEEDDTLKRAVSVYRGKCWKKIAEFFP-DRSEVQCLHRWQKV 104
                              688*****************************.************96 PP
2Myb_DNA-binding40.65.8e-13111151142
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                              +g+WT eEd++++++v+++G+  W+ Ia+ +  gR +kqc++
  Sme2.5_00294.1_g00006.1 111 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLT-GRIGKQCRE 151
                              79******************99*********9.*******95 PP
3Myb_DNA-binding574.6e-18219262146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +++WT eE+  l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Sme2.5_00294.1_g00006.1 219 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 262
                              679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.77854109IPR017930Myb domain
SuperFamilySSF466898.74E-1156102IPR009057Homeodomain-like
SMARTSM007171.4E-1458107IPR001005SANT/Myb domain
PfamPF002496.9E-1559104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1761108IPR009057Homeodomain-like
CDDcd001671.11E-1262105No hitNo description
SuperFamilySSF466895.99E-2088154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-19109154IPR009057Homeodomain-like
SMARTSM007172.0E-10110159IPR001005SANT/Myb domain
PROSITE profilePS5129415.611110162IPR017930Myb domain
PfamPF002492.1E-12111151IPR001005SANT/Myb domain
CDDcd001672.62E-11113151No hitNo description
Gene3DG3DSA:1.10.10.601.0E-5207226IPR009057Homeodomain-like
SuperFamilySSF466891.54E-21207270IPR009057Homeodomain-like
PROSITE profilePS5129428.362214268IPR017930Myb domain
SMARTSM007177.2E-18218266IPR001005SANT/Myb domain
PfamPF002497.0E-16219262IPR001005SANT/Myb domain
CDDcd001671.47E-13221264No hitNo description
Gene3DG3DSA:1.10.10.603.9E-19227265IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDELKVDECC TENKQSAAAS SSSVSENSGS VTLRSPAVSS PTPASPTHRR TTGPIRRAKG  60
GWTPEEDDTL KRAVSVYRGK CWKKIAEFFP DRSEVQCLHR WQKVINPELV KGPWTREEDD  120
KIIELVAKYG PIKWSVIAKS LTGRIGKQCR ESFASVDLLP NLGRVNLLTT FLLLLAALVF  180
VYLTVSGNKA YYFGWLYGLM IIALNLNRWH NHLNPNIKKD AWTLEEERAL IDAHRIHGNK  240
WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YVATGNLPPA TGTAKAEELR VRSNKTSEGA  300
EVASSGTTDT CKIENGWQAA EISASNVGPQ TESTDSEVVR LESQSPEGDA IQHIKPSTAS  360
ENRYEGWSID SAVGRLQVLE PPFPREIPTC GMLCYEPPRS ESCISLDSDL LNICRAQCES  420
DASPSPSPNG FFTPPSTKGH SLCAQTPESV LRIAARSFPN TPSILRKRKT QGEHSTPTNK  480
MGKPDGDICK EKPIDACDEI QYDCSDKSSM HNGVSSKNSL NGGLYNSQAF NASPPYRLRS  540
KRTSIFKSVE KQLQFALNKE KHDTSNGFSD STVNKISHAA KDSSQDTREE FSRLVAAMFS  600
QILVDLSISE KKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-34582684159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-34582684159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341026.10.0PREDICTED: uncharacterized protein LOC102603790 isoform X2
TrEMBLM1AHL20.0M1AHL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.12e-98myb domain protein 3r-3