PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00288.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 36634.6 Da PI: 9.7667 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 35 | 82 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +rWT+eE + + +a+ ++ ++ + +a++++ +++++++k + + Sme2.5_00288.1_g00010.1 35 DRWTPEEKQYFENAFSRYNNPgsktFFQFVASKFP-HKSPEEIKKQYIT 82 69*********************************.********99976 PP | |||||||
2 | Myb_DNA-binding | 34.3 | 5.5e-11 | 142 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT+ E++l++ + +++G+g+Wk+I++ + +t+ q+ s+ qky Sme2.5_00288.1_g00010.1 142 PWTEGEHQLFLMGLNKFGKGDWKSISSSVWyyvVSKTPTQVASHAQKY 189 7********************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.648 | 32 | 88 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-4 | 33 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.66E-8 | 35 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-5 | 36 | 84 | No hit | No description |
PROSITE profile | PS51294 | 12.594 | 135 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-14 | 137 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-4 | 139 | 192 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.7E-14 | 140 | 192 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 7.16E-8 | 142 | 190 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 142 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-9 | 142 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDWPEFLESL NPQEPTFHLF GASSHDNHEV LPQADRWTPE EKQYFENAFS RYNNPGSKTF 60 FQFVASKFPH KSPEEIKKQY ITLFKDVEMK NLTNNNNGVV VAKDDHRDDD HHQVTEDDNS 120 LVNNVPPQVE NSYSRRRRRG IPWTEGEHQL FLMGLNKFGK GDWKSISSSV WYYVVSKTPT 180 QVASHAQKYF CRRNSQTPVD RRRASINDIQ TVIVTPKRKT TSPPKINNNM LAYNNNCQVG 240 SSSMPFPYPN YYPFGGPTFT KDSNRNFGRY YRGEASSSNS FVLEKSNNNN NNLQRTKSPR 300 PFPSIYLSSA RGNNPQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233758.1 | 1e-112 | transcription factor SRM1-like | ||||
TrEMBL | K4BAA9 | 1e-110 | K4BAA9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g082390.1.1 | 1e-111 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-26 | MYB family protein |