PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00281.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 454aa    MW: 50552.7 Da    PI: 6.3435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00281.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28220280159
                              ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kgs+ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Sme2.5_00281.1_g00010.1 220 MNDGCQWRKYGQKIAKGSPnCPRAYYRCTAApGCPVRKQVQRCLEDMSILITTYEGTHNHP 280
                              58***************9736*********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-31205282IPR003657WRKY domain
SuperFamilySSF1182902.09E-25213282IPR003657WRKY domain
PROSITE profilePS5081126.911215282IPR003657WRKY domain
SMARTSM007743.5E-35220281IPR003657WRKY domain
PfamPF031066.9E-26221280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MENNKSENDN EMEIDLSLKL DAGEEENEEN QIGESSQLNE KTQEKDQELP KNEELSILEK  60
EMKRMKEENK VLRKAVEQTM KDYHDLRAKF SIHQNNHKDH KNFLSLSGND DTSEGQTRVP  120
KLLDITNANT ISSPTSLEDD SMDGDQLGLS LTLVSSNSTT SNKLVEVLEE EQKKDHTTFT  180
HQIQNKPQNL GGLTNHVTTA SPPNRKSRVS VRARCESATM NDGCQWRKYG QKIAKGSPNC  240
PRAYYRCTAA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TASAAASFML  300
MDSSISPLLN HNSTLNQFPN YHNNNNLAPN YHHSSSSPYN ISNLRNNILN SSDHISSQGN  360
IVLDLTKNQF PFASSSSNTH EIGHSNWMPK LPNYEGNSLY NHHNNNNNNN NNIPPMLAHE  420
NMSAIASDPK FRVAVAAAIS SLINKDQSHS TGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21207284176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-106HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166103.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLA0A3Q7FAR10.0A0A3Q7FAR1_SOLLC; Uncharacterized protein
STRINGSolyc01g104550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-56WRKY DNA-binding protein 9