PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00265.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 208aa MW: 22823.3 Da PI: 9.1928

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00265.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.8e-33	113	169	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF Sme2.5_00265.1_g00009.1 113 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 169 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.3E-36	111	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.561	112	172	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.2E-27	114	169	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	115	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	117	137	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	146	169	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MTSSLHHHSD GSENEQPENQ SEAHTESSSA ATGMSVPGTV SPNMHYAMPT QLGNGNAMTQ 60 TAYPYPDPYY RSIFAPYNAQ PYHPQPYSAQ AMVHIQLMGI QQAGVPLPSD KIDEPVFVNA 120 KQYHGILRRR QSRAKAESEK KLLKARKPYL HESRHLHALK RARGCGGRFL TANKTDDQQK 180 QDESGDKSHV NINLGSGKDG VASSANAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	112	182	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616286.1	1e-131	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X4
Refseq	XP_016464646.1	1e-131	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X4
Swissprot	Q84JP1	6e-64	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S3ZJW1	1e-129	A0A1S3ZJW1_TOBAC; nuclear transcription factor Y subunit A-7 isoform X4
STRING	PGSC0003DMT400054416	1e-124	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-55	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]