PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00252.1_g00017.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 348aa MW: 40026.4 Da PI: 7.8532

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00252.1_g00017.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	75	128	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Sme2.5_00252.1_g00017.1 75 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 128 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-30	71	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.085	71	131	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-16	72	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	75	130	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-10	76	127	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MKRESSTEDS KTSPPNQNEF EEEEDEDEEE DDLETEENSK AQGRTRSSSS NSTVEENGKK 60 TNSGSVRQYI RSKTPRLRWT PELHLRFVHA VERLGGQDRA TPKLVLQLMN IKGLSIAHVK 120 SHLQMYRSKK TDDPNQTVSV DGRFLLENGD HHIFNLTQLP RLQGFNQTSS SSLRYENALW 180 NRQVNPLYNP YNINMGVGSS IRRHGQLFSW NKSLDIEKNQ NRQNQRLWPT QSGITPAKQN 240 LLITLPIDRN RDKDEIVNRR SEQEMMGAKE NRGKWWMSEH VAINTCSNKI RIQDSEINLD 300 LNLSPKTTRE NHPKRLKAEQ VGDLLTLSLF SSTSTSEENK ASTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MKRESSTEDS KTSPPNQNEF EEEEDEDEEE DDLETEENSK AQGRTRSSSS NSTVEENGKK  60
TNSGSVRQYI RSKTPRLRWT PELHLRFVHA VERLGGQDRA TPKLVLQLMN IKGLSIAHVK  120
SHLQMYRSKK TDDPNQTVSV DGRFLLENGD HHIFNLTQLP RLQGFNQTSS SSLRYENALW  180
NRQVNPLYNP YNINMGVGSS IRRHGQLFSW NKSLDIEKNQ NRQNQRLWPT QSGITPAKQN  240
LLITLPIDRN RDKDEIVNRR SEQEMMGAKE NRGKWWMSEH VAINTCSNKI RIQDSEINLD  300
LNLSPKTTRE NHPKRLKAEQ VGDLLTLSLF SSTSTSEENK ASTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	76	130	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-75	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077981.1	1e-159	putative two-component response regulator ARR13 isoform X1
TrEMBL	A0A3Q7HNH9	1e-156	A0A3Q7HNH9_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400077217	1e-150	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-50	G2-like family protein