PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00250.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22253.6 Da PI: 4.8087 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.8e-16 | 17 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+++Aa+a++ a+++l+g Sme2.5_00250.1_g00015.1 17 SIYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPQMAAAAYDVAALALKG 66 579***9.55.6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.95E-14 | 17 | 77 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-16 | 17 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 18 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.269 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-26 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-24 | 18 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MADPSHATKS RTSTKHSIYR GIRCRSGKWV SEIREPRKTT RIWLGTYPTP QMAAAAYDVA 60 ALALKGTQNV VLNFPHHANS YPKLPPSPSP ADIQHAAATA ATMMAQKGND DQSSRSEEEA 120 TYNEGGSTES TLSENCPMQI ENRERINKEE EYVDEEALFD FPSLIVNMAE AMMLTPPRIN 180 SFPSEDYSSG DFDGENLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 12 | 79 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552063.1 | 9e-99 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 1e-41 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2G2W2Y1 | 5e-99 | A0A2G2W2Y1_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032624 | 5e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-39 | ERF family protein |
Publications ? help Back to Top | |||
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