PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00240.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24912.8 Da PI: 8.6765 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6e-08 | 68 | 113 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR + + ++ L++l+P+ + + K++ i+ + ++YIk L+ Sme2.5_00240.1_g00009.1 68 KERNRRGKTAEMYSLLQSLIPTiS---HIHKVTREKIVAESTDYIKRLE 113 6*********************99...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.782 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-5 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.26E-6 | 67 | 116 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-9 | 67 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 68 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-8 | 68 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.073 | 153 | 218 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MWQEMMIKEE AEEEEIERLF MGVMGGYRDA FMPPLTDFSA MNQMGSSSSY GCKKQRKEDP 60 MLADSIHKER NRRGKTAEMY SLLQSLIPTI SHIHKVTREK IVAESTDYIK RLEEEILRLK 120 NLKKSLLVYK PALSQCKNRV SSVNVTLSRG LAFFGIQFQL TQGLMTNIFS VLDKHHAEVL 180 AANVSVSDHR LATLAITVMI GNNDSNNVEN IRRELLLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243488 | 1e-113 | AC243488.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12k2 map 1, complete sequence. | |||
GenBank | AC246588 | 1e-113 | AC246588.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-70o17 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-113 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321200.2 | 1e-118 | uncharacterized protein LOC104647475 | ||||
TrEMBL | A0A3Q7EFT0 | 1e-114 | A0A3Q7EFT0_SOLLC; CASP-like protein | ||||
STRING | Solyc01g067340.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 4e-06 | bHLH family protein |