PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00236.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 18422.1 Da PI: 10.077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 115 | 130 | 2 | 17 |
EETTTTEEESSHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLk 17 Cp Cgk F ksnL Sme2.5_00236.1_g00021.1 115 MCPSCGKKFDPKSNLS 130 6*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MNVEEWRFDV AAMAKQIFLK KFLDFLPWNP HSFKESDDNK IQESCTKIQE HAFMQHYRIT 60 DISSWDNLPA SRSVIRGDYD SRIGARADSK VEKKKCPRCS RWCKYYATKS TSIIMCPSCG 120 KKFDPKSNLS SSGRNLAVRS SLYRKKQDHQ RLFLEVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1E171 | 4e-54 | M1E171_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097692 | 7e-55 | (Solanum tuberosum) |