PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00236.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 204aa MW: 23772.1 Da PI: 4.7564 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.8 | 9.2e-11 | 113 | 196 | 13 | 97 |
DUF573 13 ivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++L+ ++d+k ktg p+ ++ +++ s+ +k+s+++l +Ki + + +++ ++ ++++p ++++ dq++f+l+ ++Wg Sme2.5_00236.1_g00016.1 113 LAILRTIMDYKCKTGEFPHPPSGKLLDYIMYSLPyLKISRENLAKKIIAFENNYNDSWEL--DEDKPGLDRPVDQEMFNLCTRLWG 196 89*****************************997479***********************..999********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05795 | 1.7E-7 | 13 | 176 | IPR008780 | Plasmodium vivax Vir |
Pfam | PF04504 | 5.4E-7 | 112 | 196 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLPEGESVPE NGCKNYDDDD KEGKKDVYGR KGNQDSEQGE RGKQGNQEPD KTEKGKTEEL 60 DSNGEHETKH ENEEERRRRA AEKGKRPMSK LGRFKGASDA DYYDYDCDFP QNLAILRTIM 120 DYKCKTGEFP HPPSGKLLDY IMYSLPYLKI SRENLAKKII AFENNYNDSW ELDEDKPGLD 180 RPVDQEMFNL CTRLWGDHKE FYDH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1DZG3 | 1e-57 | M1DZG3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096888 | 2e-58 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15523 | 6 | 7 |