PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00236.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 361aa MW: 41359.3 Da PI: 4.0178 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 36.3 | 1.5e-11 | 264 | 348 | 12 | 97 |
DUF573 12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++++L+ + +fk ++g p+++ d++++++ +si ++k+ ++l+eKi +L + f + + +g++p++ ++ +++if++s+++W Sme2.5_00236.1_g00014.1 264 DLAILRSMWQFKCNNGDLPYAHSDELHNYIMDSIpNLKILGNDLTEKIGELEENFYTARML--DGDNPEMPEPIEREIFDFSMRLW 347 689*******************************5589*****************999988..9********************** PP DUF573 97 g 97 g Sme2.5_00236.1_g00014.1 348 G 348 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.9E-7 | 264 | 348 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MLPAGEQVPE NGEILTSSSQ VPDPPSPKAD RNNNRESIDV LETEPPCDES LSEIIKEDEE 60 ESVSSDSLNE RKRSRTDEEE EEGNATEAIS DANKSRRIHE EEGKNELDEQ NGNQDSEHRG 120 NQESEVADEK ERGNQENNNG EEDKNEETEE VEKEELPQCS TAEEEGQKHE LDEHRENAGE 180 EDNVNRINSE KNERGVEESQ QNKGKEVRKA SVKGKRPFLE AIVPNFSKFE RGEPSCTQNL 240 LPNDDTALID HELNNDDNYD YHRDLAILRS MWQFKCNNGD LPYAHSDELH NYIMDSIPNL 300 KILGNDLTEK IGELEENFYT ARMLDGDNPE MPEPIEREIF DFSMRLWGNS EDNIEELMIL 360 I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 2e-32 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170159.1 | 3e-95 | PREDICTED: myb-like protein X | ||||
TrEMBL | M1DAW9 | 6e-94 | M1DAW9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086060 | 1e-94 | (Solanum tuberosum) |