PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00236.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 577aa    MW: 64262.9 Da    PI: 6.7355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00236.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.31.6e-1282075761373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+a+++++l   ++l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y++l+++e +     + l+++++++e
  Sme2.5_00236.1_g00007.1 207 LKQLLIACARALAENNLDDFDKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRTLRCKEPA---GRDLLSYMHILYE 289
                              689******************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaL +Rp+g+p++RiTg+++p s+  + + l  +g+rLa + e
  Sme2.5_00236.1_g00007.1 290 ICPYLKFGYMAANGAIADACRNENRIHIIDFQIAQGAQWMTLLQALVARPSGAPHVRITGIDDPVSKyaRGDGLALVGKRLAAISE 375
                              ****************************************************************999999**************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++++p+ef++ v     +++ ++L+v+pgEalaVn+ l+lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ r
  Sme2.5_00236.1_g00007.1 376 KFHIPVEFHA-VPVFAPEVTRDMLDVRPGEALAVNFPLALHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPR 460
                              **********.6888999******************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              fle+l+yysa+fds++++l+r+ +eri+vE+++l+r+ivnv+aceg+er+erhe ++kW+ r+++aGF+++pls++++  +k+l+r
  Sme2.5_00236.1_g00007.1 461 FLETLDYYSAMFDSIDVTLGRDRKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKLRFTMAGFHQYPLSSYVNLVIKSLMR 546
                              *************************************************************************************9 PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++ + y++ e++g+++lgWk+r+L+s+SaW
  Sme2.5_00236.1_g00007.1 547 CYS-EHYTLVEKDGAMLLGWKERNLISASAW 576
                              988.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.922181558IPR005202Transcription factor GRAS
PfamPF035145.6E-126207576IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MESHHLYGYG VTDANLSYSY PLTTTPSIPS RLLGTLKFDS GNSPNSPFVN YFDPGTPTTL  60
SDSLEQHSST ENICGTSPSS NSYNHYFCRP SPSPDFRHNS LLLCSGESSL LQYANHSHNM  120
KHALLQLETA LMGPEEVKTS SSSAGEQTSG QSSGMWNQDG QVSCRIETQP PHVSVFGVSG  180
NMIQSEKRHK AMEDLLFQGI QIPFGNLKQL LIACARALAE NNLDDFDKLI AKARSAVSIT  240
GDPIQRLGAY IVEGLVARKE ASGTNIYRTL RCKEPAGRDL LSYMHILYEI CPYLKFGYMA  300
ANGAIADACR NENRIHIIDF QIAQGAQWMT LLQALVARPS GAPHVRITGI DDPVSKYARG  360
DGLALVGKRL AAISEKFHIP VEFHAVPVFA PEVTRDMLDV RPGEALAVNF PLALHHTPDE  420
SVDVTNPRDE LLRMVKSFSP KVVTLVEQES NTNTAPFFPR FLETLDYYSA MFDSIDVTLG  480
RDRKERINVE QHCLARDIVN VIACEGKERV ERHELFGKWK LRFTMAGFHQ YPLSSYVNLV  540
IKSLMRCYSE HYTLVEKDGA MLLGWKERNL ISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-602095776375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080715.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLQ00LP60.0Q00LP6_SOLLC; GRAS2
STRINGSolyc07g063940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-177GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]