PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00232.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 285aa    MW: 30867.5 Da    PI: 5.894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00232.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY377e-12198254259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D+++W+KY     + s+f+  YY C    +Cp+k+ v++s +dp+  ++t +g+Hnh+
  Sme2.5_00232.1_g00015.1 198 ADQWRWKKYEI--GHYSTFTGIYYTCGEVeNCPAKRLVQKSIRDPNKGIVTCRGQHNHP 254
                              59*******53..46799********9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-12189255IPR003657WRKY domain
PROSITE profilePS5081112.277192256IPR003657WRKY domain
SuperFamilySSF1182905.1E-11193255IPR003657WRKY domain
SMARTSM007745.7E-6197255IPR003657WRKY domain
PfamPF031063.2E-9199254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVISMLVIPR FFGNGDINVN NTSVLGNGDI NVNNTSVHGN GDINVNNTSV HGNGDINVNN  60
TSVHGNGDIN VNNTSGHGNG DINVNTSVLG DQTVHEDPTQ GTSVNGDINV DNTSVLDNHS  120
VHEDPTHGNS VNGDINVNNT SVLDNHSVHE DPTHGNSVNT TQDTAHFPEE SHSVGTRIPI  180
QELNPATKKT KREIVAEADQ WRWKKYEIGH YSTFTGIYYT CGEVENCPAK RLVQKSIRDP  240
NKGIVTCRGQ HNHPPLNQHI AMVQRRPNAA VPMEDPSFPS STSTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165593.15e-38PREDICTED: WRKY transcription factor 22-like
TrEMBLM1DVX51e-36M1DVX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952712e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-09WRKY DNA-binding protein 69