PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00232.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 27262.8 Da PI: 5.7541 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.2 | 4e-24 | 153 | 211 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYG+K+ gs+f +sY+rC +Cp+k++v++s++dp+ v++tY+++Hnh+ Sme2.5_00232.1_g00014.1 153 TDQWRWRKYGKKPTGGSTFLKSYFRCNEVdDCPAKRHVQKSSTDPNKVIVTYRNQHNHP 211 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.801 | 147 | 213 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.1E-24 | 147 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-21 | 151 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-24 | 152 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-19 | 154 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAENENDWDL WAVVRSCSNM NNSVHDDNNV NSTSVLDDHG FHKDPTHENS VTNTQNTTLF 60 PEESDCVGDF TDWFPIENKH YFGLDEVISL SKNLNTNSGI EQVVVEHEEE EEKKKKKVRY 120 SMQSSSTGPG EAFPYRGKST ERYEILAEKL SETDQWRWRK YGKKPTGGST FLKSYFRCNE 180 VDDCPAKRHV QKSSTDPNKV IVTYRNQHNH PPPNQHIGMV HRSPNAAAPA EDPSFPSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-13 | 150 | 214 | 14 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-13 | 150 | 214 | 14 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165593.1 | 1e-131 | PREDICTED: WRKY transcription factor 22-like | ||||
TrEMBL | M1DVX5 | 1e-130 | M1DVX5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095271 | 1e-130 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11091 | 13 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 4e-18 | WRKY DNA-binding protein 35 |