PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00232.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 24228.5 Da PI: 6.6709 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 47.8 | 3.1e-15 | 37 | 64 | 35 | 62 |
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +C ryWt+GG+lrnvPvGgg+rknk+s+ Sme2.5_00232.1_g00011.1 37 NCPRYWTEGGSLRNVPVGGGSRKNKRSN 64 8************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-6 | 26 | 56 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.4E-10 | 37 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDTSSQWPQG IGVVKGVETS SKLDERKPRP QKEQAINCPR YWTEGGSLRN VPVGGGSRKN 60 KRSNNNINNN NSNNNNSSSL SSPTSSSKKT LLSDLANPND LNLTYNPIHT ATTTACNFSS 120 FSDFMALPLS HPSANSAYSL NMPDSLYASS SVTTGLPDLK PSSINFCLDG FGGDHHEAKL 180 FFPMDDLKMN VSTANEGQFE ENRGQEAHQS NGFWNGMLGG GSSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069116.1 | 6e-88 | dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A0V0HLL2 | 9e-85 | A0A0V0HLL2_SOLCH; Putative dof zinc finger protein DOF4.6-like | ||||
STRING | Solyc03g082840.2.1 | 7e-83 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-10 | Dof family protein |