PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00211.1_g00016.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 175aa MW: 19769.4 Da PI: 10.2783

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00211.1_g00016.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	49	102	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sme2.5_00211.1_g00016.1 49 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 102 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-16	46	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-29	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-24	49	102	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-8	50	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MVANRFHNQH QHSQYYNGVG LGSPSSHENS LMRSRFLPKF PAKRSMRAPR MRWTTSLHAR 60 FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDKSA ASSGQSDGSG 120 EEDLLAIDRI LDQRGPSDGC DDPSTTLWSN SSSRKLEQSP ISKKKLRREL YLLEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	50	104	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	50	104	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239583	2e-52	AC239583.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0201O22, complete sequence.
GenBank	HG975444	2e-52	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	2e-52	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345507.1	6e-99	PREDICTED: transcription repressor KAN1-like isoform X2
Swissprot	Q9C616	2e-53	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M1A9V1	1e-97	M1A9V1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400017981	2e-97	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2468	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-49	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]