PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00211.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 26487.4 Da PI: 6.1027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g++++eIrd + ng r++lg+f+taeeAa a+++a+++++g Sme2.5_00211.1_g00009.1 103 HYIGVRKRP-WGKYASEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRG 153 799******.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.24E-28 | 102 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 103 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 103 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 103 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 103 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-13 | 103 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-10 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSSNSIPLEI DTSFAHSNFF FFQNESPPTT PWNSDDLFFN DPFVEEYDHQ DSPIINIPCE 60 NDHQEVVESS NTTTTTTSKA SGQNSHHDQE KVTSQEKKQE EKHYIGVRKR PWGKYASEIR 120 DSTRNGIRVW LGTFDTAEEA ALAYDQAALS MRGPWSLLNF PIEQVKKSLE KIEYSCKDGL 180 SPAAVLKATH KTRRVKHKRR RRKNNNKNVE NVLVFEDLGV ELLEELLINS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-28 | 102 | 162 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 202 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY044236 | 1e-165 | AY044236.1 Lycopersicon esculentum ethylene-responsive factor 1 (ERF1) mRNA, complete cds. | |||
GenBank | EU395634 | 1e-165 | EU395634.1 Solanum lycopersicum ethylene response factor (ERF1) gene, promoter region and complete cds. | |||
GenBank | HG975517 | 1e-165 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360378.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 8e-50 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1B5Y7 | 1e-115 | M1B5Y7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037826 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-30 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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