PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00204.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 478aa    MW: 53808.7 Da    PI: 6.244
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00204.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.4e-35141062103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d ++++++sws+++nsfvv++  ef+++vLpkyFkh+nf+SFvRQLn+Yg+kkv+ +          weF+++ F 
  Sme2.5_00204.1_g00007.1  14 FLSKTYDMVDDLSTDSVVSWSKSNNSFVVWNVPEFSRNVLPKYFKHNNFSSFVRQLNTYGYKKVDPDC---------WEFANEGFL 90 
                              9***************************************************************9987.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              kg+k+ll++i+r+k +
  Sme2.5_00204.1_g00007.1  91 KGQKHLLKTIRRRKPS 106
                              *************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.5E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEGVHEIGNP PPPFLSKTYD MVDDLSTDSV VSWSKSNNSF VVWNVPEFSR NVLPKYFKHN  60
NFSSFVRQLN TYGYKKVDPD CWEFANEGFL KGQKHLLKTI RRRKPSQMQV HPGTASQVQS  120
LSVGSCVEVG KIGIEEDVER LKIDKNIHRE ELVKLRQQQQ ATDHRLENVG QRLQLMEQTE  180
QQAMSFLAKV LQSPGFIAEL VHQQNEGKRH ITGMNKKRRF PNQEDENYAG KQISTLHDRQ  240
IVRYQPLMNE AAKTLLQKIL KTNTSGRLET KVKNTNGFLT NRARSSENIL EVGGISPHIS  300
EFALSQLPTS SKSHLMSDSR FPFNSSLSVI PEIQYSPSLV PGESKVPQLN ALNPQADHVN  360
PEFSGHGINR PKTLELTDLK QSETCDMPYT DTMQGIVDGV ASIVPDELST DDVFSDEMPK  420
LPGINDIFWD QILLTSPLTG DKDEMGSLAL EDGLAKEEDV AGVKDNDCDK LKHMSHLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231210327129Heat shock factor protein 1
5d5v_B1e-231210327129Heat shock factor protein 1
5d5v_D1e-231210327129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2110390.0AC211039.2 Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence.
GenBankAC2192270.0AC219227.1 Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347336.10.0PREDICTED: heat stress transcription factor A-1b-like
TrEMBLM1CKN30.0M1CKN3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000695500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-122heat shock factor 3