PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00194.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 291aa    MW: 32388.3 Da    PI: 9.2319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00194.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-203787256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Sme2.5_00194.1_g00013.1 37 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 87
                             799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5083794IPR001471AP2/ERF domain
CDDcd000182.76E-323794No hitNo description
SuperFamilySSF541712.94E-203795IPR016177DNA-binding domain
SMARTSM003806.1E-3837100IPR001471AP2/ERF domain
PfamPF008472.4E-153787IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-283794IPR001471AP2/ERF domain
PRINTSPR003672.8E-73849IPR001471AP2/ERF domain
PRINTSPR003672.8E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MATSSQNTKA TITTSTNTNN TKSSSTQPNY KSSATRKFVG VRQRPSGRWV AEIKDSSQRV  60
RLWLGTYDTP EEAARAYDEA ARALRGENAR TNFAPNNPNS DFDQSNILHS SKHGLSFSSI  120
KAKLSKNLQS IMARNSENKS SSSSKSIRVS DHFTFARIFH FKNNYDHQYQ NHVDMMNKVV  180
QPSIRVLPHD VTDNNNNNNN NESSWENSSV SDCSSEWAAF RQLGLESDNY GSDGSEYFVG  240
SDPLMGGWVS SPDIMSSSTT TIEGSRSKRF KVSSSVIVPP TFSESDNYVP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1437931471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081483.11e-136ethylene-responsive transcription factor ERF010-like
TrEMBLA0A3Q7EKU01e-134A0A3Q7EKU0_SOLLC; Uncharacterized protein
STRINGSolyc01g091760.2.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11