PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00187.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 21594.8 Da PI: 4.5072 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l++++ ++G g+W++ ar+ g++Rt+k+c++rw++yl Sme2.5_00187.1_g00005.1 5 RGPWSVEEDYILINYISRYGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.479 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 2 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.9E-22 | 6 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 7 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 56 | 79 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MELRRGPWSV EEDYILINYI SRYGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPNVRHGN 60 ITLEEQLLIL QLHSRWGNSS ATRSENMRTD ITEFVPIQLA NSNNNNSTLS TSVTTENTSM 120 TTLSENSIEA QVSPDQDYYQ VNQSDHQLWF EDYYQGMDQQ NNIQLWMDNE DIFNNLCNIE 180 DIWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-16 | 2 | 113 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU934734 | 2e-83 | EU934734.1 Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349850.1 | 1e-68 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | M1A033 | 2e-67 | M1A033_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g099130.1.1 | 1e-68 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.2 | 5e-35 | myb domain protein 78 |