PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00182.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 19904.5 Da PI: 9.5483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.6e-14 | 105 | 149 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ q++ Sme2.5_00182.1_g00023.1 105 PWTEEEHRTFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQNH 149 8******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.206 | 98 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-15 | 99 | 154 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-15 | 101 | 148 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 102 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-10 | 102 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 105 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.30E-10 | 105 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGRKCSHCGI TGHNSRTCKS DKTKNEDEKI IKANIGMMKL FGVEVEVASN SSWMKKSFSV 60 GCLSNSSKIS SSTAGSFASN YCDISNGYLS DELVGRNSYK KKGVPWTEEE HRTFLVGLEK 120 LGKGDWRGIS RNFVTTRTPT QVASHAQNHD ISVQDSRVPD LELTLAAPTR KGGLLAGSTI 180 TVI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010894 | 1e-47 | AP010894.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0017M21, complete sequence. | |||
GenBank | HG975520 | 1e-47 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780709.1 | 2e-71 | PREDICTED: myb-like protein H isoform X1 | ||||
Refseq | XP_016450793.1 | 2e-71 | PREDICTED: myb-like protein H isoform X1 | ||||
Swissprot | Q7XC57 | 8e-38 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A1S3YFJ3 | 4e-70 | A0A1S3YFJ3_TOBAC; myb-like protein H isoform X1 | ||||
TrEMBL | A0A1U7X1F4 | 4e-70 | A0A1U7X1F4_NICSY; myb-like protein H isoform X1 | ||||
STRING | XP_009780709.1 | 6e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-44 | MYB_related family protein |
Publications ? help Back to Top | |||
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