PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00175.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 957aa    MW: 107940 Da    PI: 6.6874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00175.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06112136526
                              --SGGGGTS...--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                              lC+  a++G    C+y d+C+F+H+
  Sme2.5_00175.1_g00018.1 112 LCPEVAKSGkasSCPYNDKCRFSHD 136
                              799999******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.047112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.376151176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.706.0E-72342585IPR013785Aldolase-type TIM barrel
CDDcd028012.05E-88346581No hitNo description
SuperFamilySSF513951.34E-62346659No hitNo description
PfamPF012073.5E-50349616IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360430448IPR018517tRNA-dihydrouridine synthase, conserved site
SuperFamilySSF484648.72E-37702849IPR008942ENTH/VHS
PROSITE profilePS5094232.012716849IPR013809ENTH domain
Gene3DG3DSA:1.25.40.901.6E-36721861IPR008942ENTH/VHS
SMARTSM002731.0E-17722849IPR013809ENTH domain
CDDcd035713.32E-39725846No hitNo description
PfamPF014172.5E-26725845IPR013809ENTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MENETLMDES PAATAVEHPE TQLQPLSSNT DDGGVSHEFR TPEELVAKAI APVKREYLRP  60
PPSRPCNNND STVGVQNDDA AEAKNTPILK DKKSKRQIKR ERRQELKSPL HLCPEVAKSG  120
KASSCPYNDK CRFSHDVEAF KAEKPADIEG SCPFLVYEGP CPYGLACRFA GTHRNDVSAP  180
TENLPRKDSE LNFFNKDTQK LLWKNKMKFP KAEATLKLLG CKGNPKDKTL ADKGENGQVV  240
PKESATDTKI DSNEVANDSI RPSISPEDDA DETNLAEDTR PLKKAKSSVN EICSSQVSSG  300
SGVQGGVLDS NCDVNKLEPS ADEMTDSDKS LKLHPREKKL IDFRDKLYLA PLTTVGNLPF  360
RRVCKVLGAD VTCGEMAMCT NLLQGQASEW ALLRRHSSEN LFGVQICGAY PDTVSKTVEL  420
IEQECSVDFI DINMGCPIDI VVNKGAGSAL LTKPTRMKSV VEAASSTVDT PITIKVRTAY  480
FEGKNRIDSL IADMGNWGAT AVTIHGRSRQ QRYSKLADWD YIYRCVQKAP KSLQVLGNGD  540
VFSYLDWNKH KIECPELSTC MIARGALVKP WIFTEIKEQR HWDITSGERL DILKDYTRFG  600
LQHWGSDSKG VETTRHFLLE WLSYTCRYVP VGLLDVIPQR INWRPPSYYG RNDLETLMAS  660
DSAADWVRIS EMLLGKSNSR ILTRKETKGD MDSPLLHEFK RQASFFLKEK FKTARLALTD  720
VTPPQLLAEE ATTGDLIAPN MQTMRIISRA AFEVDDYWRI VDILHKRLSK FDRRNWRSSY  780
KAVMLLEYLL THGPESIAEE FQSDEDVIRH MESFQYVDEK GFNWGSSVRN MSERVLKLLE  840
DRSFLKEERE RARKVTVGIK GFGSFCERPV LGEESMKEAI SERYLRSNSD FIDCQNKENQ  900
IMASENRFSC KERLGNALII HKNMASDPVS DAMEWDQHPF CDTRDKYSRA SLLSTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2834359027266tRNA-dihydrouridine synthase B
6ei9_B1e-2834359027266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992530.0KM399253.1 Solanum tuberosum FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359609.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLM0ZN070.0M0ZN07_SOLTU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGPGSC0003DMT4000041760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]