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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_00175.1_g00016.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 313aa MW: 35156.8 Da PI: 9.6301 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00175.1_g00016.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 312.1 | 1.9e-95 | 1 | 313 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68
mdd g+re r+k y +++++ +++++ + aerda+++er+ a++ekkaa+aerd a +qrd+a+a
Sme2.5_00175.1_g00016.1 1 MDDGGEREskRHKMDYSrggyapwnvvppyqmkDQEAFI--MNTKIRMVFAERDAAVEERDRAVIEKKAALAERDFAIQQRDTAFA 84
888888877788886667888899998655443223444..7888988999*********************************** PP
GAGA_bind 69 ernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkk.. 152
r+ a+ erdn+l+al ++e +++ +l g +gtk d+ ++ ++++ +ds ++ +a+pi++ +ea ++ ++k+
Sme2.5_00175.1_g00016.1 85 ARDTAIKERDNALAALHFQECTMNGTL--G-CRTRGTKRPDQPKN-HHNNGTDSICINKDVPVADAFPISTISSEAAKTLQVKRpk 166
******************999866444..3.35689999998887.5555555554457778888888888777777666655300 PP
GAGA_bind 153 .rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
++ +++ +k +k+kk +++ ++ + + skae++ +dl ++n++++Dest+P+PvC+CtG++rqCYkWG+GGWqS+CCt
Sme2.5_00175.1_g00016.1 167 vNEGMSTKSAKSPRKAKKV----NEDLNRRLTTDGSKAEWDAQDLgSINQIQFDESTMPIPVCTCTGTPRQCYKWGSGGWQSSCCT 248
0333333333344444444....4445555545569*********88*************************************** PP
GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
t +S yPLP+ +++r+aR++grKmS+++f++lL +La +dls p+DLk++WAkHGtn+++ti+
Sme2.5_00175.1_g00016.1 249 TYLSEYPLPQLPNKRHARLGGRKMSGSVFSRLLTRLAVADHDLSIPIDLKTYWAKHGTNRYITIK 313
****************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MDDGGERESK RHKMDYSRGG YAPWNVVPPY QMKDQEAFIM NTKIRMVFAE RDAAVEERDR 60
AVIEKKAALA ERDFAIQQRD TAFAARDTAI KERDNALAAL HFQECTMNGT LGCRTRGTKR 120
PDQPKNHHNN GTDSICINKD VPVADAFPIS TISSEAAKTL QVKRPKVNEG MSTKSAKSPR 180
KAKKVNEDLN RRLTTDGSKA EWDAQDLGSI NQIQFDESTM PIPVCTCTGT PRQCYKWGSG 240
GWQSSCCTTY LSEYPLPQLP NKRHARLGGR KMSGSVFSRL LTRLAVADHD LSIPIDLKTY 300
WAKHGTNRYI TIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982315 | 0.0 | FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds. |
