PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00166.1_g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 307aa    MW: 34204.1 Da    PI: 6.7751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00166.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd++l++ +k+ G g+W++ ++  g++R++k+c++rw +yl
  Sme2.5_00166.1_g00017.1 14 RGPWTAEEDDKLIQFIKKNGHGSWRSLPKLAGLRRCGKSCRLRWTNYL 61
                             89********************************************97 PP

2Myb_DNA-binding47.63.8e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Sme2.5_00166.1_g00017.1  67 RGPFSPEEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                              89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22562IPR009057Homeodomain-like
PROSITE profilePS5129424.251965IPR017930Myb domain
SuperFamilySSF466892.81E-3012108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-161461IPR001005SANT/Myb domain
CDDcd001672.23E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2463116IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.75866116IPR017930Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.22E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRTPCCDKN GLTRGPWTAE EDDKLIQFIK KNGHGSWRSL PKLAGLRRCG KSCRLRWTNY  60
LRPDIIRGPF SPEEQKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
IDPQTHEQCS DPNGLLRRPA TSPSTRHLAQ WESARLEAEA RLSRESQFLV PSSVGRSETD  180
YFLRIWNSEI GEAFRNFKKG EKPACQSPAS QASSCTKYGS ASGITTEVEL GAAGSPVTGS  240
NQNEYTEWNI GQPYTEDFLK GSDTSSSNAM EEDSSESALQ LLLDFPSNND MSFLGHGDSY  300
SLDPFFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339543.10.0PREDICTED: myb-related protein Zm38-like
SwissprotQ9M2D91e-121MYB17_ARATH; Transcription factor MYB17
TrEMBLM0ZG360.0M0ZG36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000000940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-122myb domain protein 17