PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00165.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SBP | ||||||||
Protein Properties | Length: 104aa MW: 11913.4 Da PI: 9.3277 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 78.7 | 8.9e-25 | 44 | 94 | 2 | 51 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE.EE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf.he 51 Cq+++C++dls+ak+yh+rhkvCe h+k++vv+v+gl+qrfCqqCsrf h+ Sme2.5_00165.1_g00017.1 44 CQADKCSVDLSDAKQYHKRHKVCEYHAKSQVVVVAGLRQRFCQQCSRFdHQ 94 ************************************************555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.3E-24 | 37 | 92 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.956 | 41 | 104 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.89E-23 | 43 | 92 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-18 | 44 | 92 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MEKNDELLVI STCENAKKKI TNNNFYNKKG SSSSNSSSSV TRSCQADKCS VDLSDAKQYH 60 KRHKVCEYHA KSQVVVVAGL RQRFCQQCSR FDHQLFSVSF YMTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-19 | 34 | 91 | 1 | 58 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 3e-68 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774345.1 | 7e-39 | squamosa promoter-binding protein 1-like, partial | ||||
Swissprot | Q38741 | 2e-21 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A2G3C0Z9 | 6e-36 | A0A2G3C0Z9_CAPCH; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A3Q7HEQ9 | 2e-35 | A0A3Q7HEQ9_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1D692 | 7e-36 | M1D692_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g053810.2.1 | 3e-36 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 3e-22 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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