PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00165.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 422aa    MW: 47333.4 Da    PI: 7.6984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00165.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09134154526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+ f++ G C++Gd+C FaHg
  Sme2.5_00165.1_g00012.1 134 VCSEFRK-GNCSRGDNCEFAHG 154
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.59E-5128158IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5133156IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-7134154IPR000571Zinc finger, CCCH-type
SMARTSM003563.9164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MMEGLCAELN HHHKFHPSHQ LYKKSLRDID IPPRKLLSRR SSLVDYTVSD GQLMDSPKLG  60
VESDGNFQKF LPYNSMDDDE DADPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA  120
RRRDPRRFHY SGTVCSEFRK GNCSRGDNCE FAHGVFECWL HPTRYRTEAC KDGKNCKRKV  180
CFFAHTSRQL RVLPPGCYEN GSSPKNLNSS PSEKKYRNLN HCVFCHSVSA SPTSTLIGMS  240
HISPPISPSF SPPLSPSNRN QFSSPVSRYI DRFGSVESAS SGMGQLDPSG LMSYKDALTE  300
LVSSLEAMNV NHEPNSSAAG GAASYSVNYD GNLPWLDVNF NNNNSYDDQQ QFILSPSTPS  360
PSPISNSRTK FYTREFPSPT PVSASRLSFV EEPNNNNAGN RFYSDNGLGG GPDLGWVNDL  420
LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081171.10.0zinc finger CCCH domain-containing protein 2
TrEMBLM1D6B10.0M1D6B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000828140.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-75C3H family protein