PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00162.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 490aa MW: 56179.8 Da PI: 8.0336

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00162.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.2e-19	366	418	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Sme2.5_00162.1_g00006.1 366 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 418 55699***********************************************9 PP
2	HD-ZIP_I/II	118.2	4.4e-38	365	456	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +L Sme2.5_00162.1_g00006.1 365 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVISREKQKLQDEVLAL 450 9************************************************************************************* PP HD-ZIP_I/II 88 reelke 93 r+ lke Sme2.5_00162.1_g00006.1 451 RAILKE 456 *88875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	4.71E-13	10	89	IPR001810	F-box domain
PROSITE profile	PS50181	9.789	18	64	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	4.6E-8	20	62	No hit	No description
SMART	SM00256	2.5E-4	24	64	IPR001810	F-box domain
Pfam	PF14299	3.2E-29	115	273	IPR025886	Phloem protein 2-like
SuperFamily	SSF46689	8.55E-19	346	422	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	360	420	IPR001356	Homeobox domain
SMART	SM00389	3.6E-17	362	424	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	365	418	IPR001356	Homeobox domain
CDD	cd00086	1.57E-16	365	421	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-21	367	427	IPR009057	Homeodomain-like
PRINTS	PR00031	2.4E-5	391	400	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	395	418	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	400	416	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-7	420	454	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MGASLSSLTE NESTANGGPG LGDIPEDCVA CVFMYLTPPE ICNLARVNRA FRGAASSDAV 60 WDSKLPSNYH HLFDVLPQRI FDGVSKKDIF AFLSRPVPFD DGNKEVWLDR ISGRICMSIS 120 AKAMLITSGE DRRHWNWFPT EESRFHVVAY CQQVWWFEVS SSVKFPFPPD IYTLTFRVHL 180 GKFYKRLGRR VCNFEHTHGW DLGPVRFELF TSDGQHAVSE YSIHGGDQDD ASVNIKRGNW 240 IEYKVGEFIV SRSNPATEVR FSMKQIDCTH SKESFGAWET ASRPQLSRGK VCGVNPIFAH 300 TSLVVWALNE RFFPRPFAIE QVVIVDRGVE MKQAMQTQHG GLQLPTMDNN NNNNNFVLNH 360 HQLDKKKRLS SDQLESLENS FQEEIKLDPD RKMKLAKELG LQPRQIAVWF QNRRARWKAK 420 QLERLYDSLK QDYDVISREK QKLQDEVLAL RAILKEQAIK KQANSTVYTE ISDGLSPVMP 480 PYWPSLPTYP

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MGASLSSLTE NESTANGGPG LGDIPEDCVA CVFMYLTPPE ICNLARVNRA FRGAASSDAV  60
WDSKLPSNYH HLFDVLPQRI FDGVSKKDIF AFLSRPVPFD DGNKEVWLDR ISGRICMSIS  120
AKAMLITSGE DRRHWNWFPT EESRFHVVAY CQQVWWFEVS SSVKFPFPPD IYTLTFRVHL  180
GKFYKRLGRR VCNFEHTHGW DLGPVRFELF TSDGQHAVSE YSIHGGDQDD ASVNIKRGNW  240
IEYKVGEFIV SRSNPATEVR FSMKQIDCTH SKESFGAWET ASRPQLSRGK VCGVNPIFAH  300
TSLVVWALNE RFFPRPFAIE QVVIVDRGVE MKQAMQTQHG GLQLPTMDNN NNNNNFVLNH  360
HQLDKKKRLS SDQLESLENS FQEEIKLDPD RKMKLAKELG LQPRQIAVWF QNRRARWKAK  420
QLERLYDSLK QDYDVISREK QKLQDEVLAL RAILKEQAIK KQANSTVYTE ISDGLSPVMP  480
PYWPSLPTYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	420	RRARWKAKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-152	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-152	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341188.1	0.0	PREDICTED: F-box protein PP2-A15-like
Swissprot	Q9LF92	1e-137	P2A15_ARATH; F-box protein PP2-A15
TrEMBL	M0ZS80	0.0	M0ZS80_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400006947	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-47	homeobox 51

Publications ? help Back to Top
Dinant S, et al. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Plant Physiol., 2003. 131(1): p. 114-28 [PMID:12529520] Eggermont L,Verstraeten B,Van Damme EJM Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana. Plant Genome, 2018. [PMID:28724081]